PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_60.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family FAR1
Protein Properties Length: 320aa    MW: 35873.6 Da    PI: 6.8524
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_60.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1102.63.9e-3289180291
                        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                                 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++
  evm.model.supercontig_60.4  89 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFV 171
                                 ****************************************998888545677889**************************** PP

                        FAR1  83 leHnHelap 91 
                                  eHnHel+p
  evm.model.supercontig_60.4 172 REHNHELVP 180
                                 *******86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-3089180IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MENEVLQFDI GVGGNIGRDG DDDALDIEHH SMDDEDVVDS PATVTASGSA GFSNHGCGSG  60
EIYLPEGDLL DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF  120
VCAKEGFRNL NEKRTKDREI KRPRTITRVG CKASLSVKMQ DSGKWVVSGF VREHNHELVP  180
PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR  240
NNRHRSLEGD IQLLLDYLRQ XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXYRLPF  300
APFTGVNHHG QPVLLAVLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555162.11e-157PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL81e-150FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A067LI071e-154A0A067LI07_JATCU; Uncharacterized protein
STRINGAT4G38180.11e-147(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2388824
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-145FAR1-related sequence 5